# This file is part of Sympathy for Data.
# Copyright (c) 2017, Combine Control Systems AB
#
# Sympathy for Data is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3 of the License.
#
# Sympathy for Data is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with Sympathy for Data. If not, see <http://www.gnu.org/licenses/>.
from sympathy.api import node
from sympathy.api.nodeconfig import Port, Ports, Tag, Tags
from skimage import io
from sylib.imageprocessing.image import ImagePort
import numpy as np
import os
[docs]class SaveImage(node.Node):
"""
Saves an image to a datasource in the given file format.
"""
name = 'Save Image'
author = 'Mathias Broxvall'
version = '0.1'
icon = 'image_save.svg'
description = 'Saves an image to a datasource in the given file format'
nodeid = 'syip.saveimage'
tags = Tags(Tag.ImageProcessing.IO)
file_formats = ['png', 'gif']
parameters = node.parameters()
parameters.set_string(
'File format', value='png',
description=('Desired file format of saved file '
'(.png or .gif currently available)'),
editor=node.editors.combo_editor(options=file_formats))
inputs = Ports([
ImagePort('Input image', name='image'),
Port.Datasource(
'File name before appending file type extension (eg: .png)',
name='dest')])
outputs = Ports([
Port.Datasource(
'File name after appending file type extension (eg: .png)',
name='out')])
def execute(self, node_context):
image = node_context.input['image'].get_image()
dest = node_context.input['dest']
if dest.decode_type() != 'FILE':
raise NotImplementedError(
'Image saving must be done to file names.')
if len(image.shape) > 2 and image.shape[2] not in [1, 3, 4]:
raise NotImplementedError(
'Only images with 1, 3, or 4 channels can be exported.')
if not isinstance(image.dtype, np.uint8):
image = (image*255.0).astype(np.uint8)
if len(image.shape) > 2 and image.shape[2] == 1:
image = image.reshape(image.shape[:2])
file_format = node_context.parameters['File format'].value
dest_path = dest.decode_path()
try:
# Creating destination path if it does not exist.
os.makedirs(os.path.dirname(dest_path))
except Exception:
pass
extensions = {'png': '.png', 'gif': '.gif'}
extension = extensions[file_format]
if dest_path.endswith(extension):
full_path = dest_path
else:
full_path = dest_path + extension
node_context.output['out'].encode_path(full_path)
io.imsave(full_path, image)
[docs]class ImageToTable(node.Node):
"""
Converts an image into a table with a single column.
"""
name = 'Convert Image to Table'
author = 'Mathias Broxvall'
version = '0.1'
icon = 'image_to_table.svg'
description = (
'Converts an image into a table with a single column per channel or '
'for the whole image')
nodeid = 'syip.convert_image_to_table'
tags = Tags(Tag.ImageProcessing.IO)
parameters = node.parameters()
parameters.set_string(
'Column name', value='image', label="Column name",
description=(
'Name of column which image data is converted into, '
'or prefix if multiple columns are generated'))
parameters.set_boolean(
'Multiple columns', value=False, label="Multiple columns",
description='Converts each channel of the image into separate column')
parameters.set_boolean(
'Coordinates', value=False, label="Coordinates",
description=(
'Adds a column for XY coordinates. Channel coordinate is '
'also added if multi-columns is false.'))
inputs = Ports([
ImagePort('Input image', name='image'),
])
outputs = Ports([
Port.Table('Table containing image data', name='data'),
Port.Table('Table containing image meta data', name='meta'),
])
def execute(self, node_context):
image = node_context.input['image'].get_image()
column_name = node_context.parameters['Column name'].value
multi_columns = node_context.parameters['Multiple columns'].value
gen_coordinates = node_context.parameters['Coordinates'].value
data_out = node_context.output['data']
meta_out = node_context.output['meta']
width = image.shape[1]
height = image.shape[0]
channels = 1 if len(image.shape) < 3 else image.shape[2]
meta_out.set_column_from_array('width', np.array([width]))
meta_out.set_column_from_array('height', np.array([height]))
meta_out.set_column_from_array('channels', np.array([channels]))
if gen_coordinates:
if multi_columns:
data_out.set_column_from_array(
'X',
np.meshgrid(np.arange(width),
np.arange(height))[0].flatten())
data_out.set_column_from_array(
'Y',
np.meshgrid(np.arange(width),
np.arange(height))[1].flatten())
else:
data_out.set_column_from_array(
'X',
np.meshgrid(np.arange(width),
np.arange(height),
np.arange(channels))[0].flatten())
data_out.set_column_from_array(
'Y',
np.meshgrid(np.arange(width),
np.arange(height),
np.arange(channels))[1].flatten())
data_out.set_column_from_array(
'Ch',
np.meshgrid(np.arange(width),
np.arange(height),
np.arange(channels))[2].flatten())
if multi_columns:
for ch in range(channels):
data_out.set_column_from_array(
'{}:{}'.format(column_name, ch),
image[:, :, ch].reshape(width * height))
else:
data_out.set_column_from_array(
column_name, image.reshape(width * height * channels))
[docs]class ImageToTable2D(node.Node):
"""
Converts first channel of image into a 2D table with X along columns and
Y along rows.
"""
name = 'Convert Image to 2D Table'
author = 'Mathias Broxvall'
version = '0.1'
icon = 'image_to_table.svg'
description = (
'Converts first channel of image into a 2D table with X along columns '
'and Y along rows.')
nodeid = 'syip.convert_image_to_table_2d'
tags = Tags(Tag.ImageProcessing.IO)
parameters = node.parameters()
inputs = Ports([
ImagePort('Input image', name='image'),
])
outputs = Ports([
Port.Table('Table containing image data', name='data'),
])
def execute(self, node_context):
image = node_context.input['image'].get_image()
data_out = node_context.output['data']
height = image.shape[1]
if len(image.shape) >= 3:
image = image[:, :, 0]
for col in range(height):
data_out.set_column_from_array(
'Y{}'.format(col), image[:, col])
[docs]class TableToImage(node.Node):
"""
Converts a table into an image using a column each for: data, image width,
image height and image channels.
"""
name = 'Convert Table to Image'
author = 'Mathias Broxvall'
version = '0.1'
icon = 'image_from_table.svg'
description = ('Converts a table into an image, using columns for data, '
'image width, image height and image channels.')
nodeid = 'syip.convert_table_to_image'
tags = Tags(Tag.ImageProcessing.IO)
parameters = node.parameters()
parameters.set_string(
'Data column', label='Data column name', value='image',
description='Name of image data column in input table')
parameters.set_string(
'Width column', label='Width column name', value='width',
description='Name of image width column in input table')
parameters.set_string(
'Height column', label='Height column name', value='height',
description='Name of image height column in input table')
parameters.set_string(
'Channels column', label='Channels column name',
value='channels',
description='Name of image channels column in input table')
inputs = Ports([
Port.Table('Table containing image data', name='data'),
Port.Table('Table containing image meta data', name='meta'),
])
outputs = Ports([
ImagePort('Input image', name='image'),
])
def execute(self, node_context):
data = node_context.input['data'].get_column_to_array(
node_context.parameters['Data column'].value)
width = node_context.input['meta'].get_column_to_array(
node_context.parameters['Width column'].value)[0]
height = node_context.input['meta'].get_column_to_array(
node_context.parameters['Height column'].value)[0]
channels = node_context.input['meta'].get_column_to_array(
node_context.parameters['Channels column'].value)[0]
im = data.reshape((height, width, channels))
node_context.output['image'].set_image(im)
[docs]class Table2DToImage(node.Node):
"""
Converts a 2D table into a grayscale image, using columns as X and rows
as Y positions.
"""
name = 'Convert 2D Table to Image'
author = 'Mathias Broxvall'
version = '0.1'
icon = 'image_from_table.svg'
description = (
'Converts a 2D table into a grayscale image, using columns as X and '
'rows as Y positions.')
nodeid = 'syip.convert_table2d_to_image'
tags = Tags(Tag.ImageProcessing.IO)
parameters = node.parameters()
inputs = Ports([
Port.Table('Table containing image data', name='data'),
])
outputs = Ports([
ImagePort('Input image', name='image'),
])
def execute(self, node_context):
tbl = node_context.input['data']
data = np.array(
[tbl.get_column_to_array(colname)
for colname in tbl.column_names()]).T
node_context.output['image'].set_image(data)
